Statistical summary and other functions for hyperSpec

The following functions for hyperSpec objects:

• all(), any(),

• sum(), prod(),

• min(), max(),

• range(), and

• is.na()

All these functions work on the spectra matrix.

# S4 method for hyperSpec
Summary(x, ..., na.rm = FALSE)

# S4 method for hyperSpec
is.na(x)

all_wl(expression, na.rm = FALSE)

any_wl(expression, na.rm = FALSE)

Arguments

x

hyperSpec object

...

further objects

na.rm

logical indicating whether missing values should be removed

expression

expression that evaluates to a logical matrix of the same size as the spectra matrix

Value

sum, prod, min, max, and range return a numeric, all, any, and is.na a logical.

Details

all_wl() and any_wl() are shortcut function to check whether any or all intensities fulfill the condition per spectrum. na.rm behavior is like base::all() and base::any().

See also

base::Summary() for the base summary functions.

base::all.equal() and base::isTRUE()

Examples

range(flu)
#> [1]  27.1500 677.4947

is.na(flu[, , 405 ~ 410])
#>        405 405.5   406 406.5   407 407.5   408 408.5   409 409.5   410
#> [1,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
#> [2,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
#> [3,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
#> [4,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
#> [5,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
#> [6,] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE

all_wl(flu > 100)
#> [1] FALSE FALSE FALSE  TRUE  TRUE  TRUE

any_wl(flu > 300)
#> [1] FALSE FALSE  TRUE  TRUE  TRUE  TRUE
!any_wl(is.na(flu))
#> [1] TRUE TRUE TRUE TRUE TRUE TRUE